Hi there! 👋
This is the GitHub organisation home of the pyani-plus bioinformatics software.
pyani-plus is an application and Python module for whole-genome classification of microbes using Average Nucleotide Identity and similar methods. It is a reimplemented version of pyani with support for additional schedulers and methods.
It contains the repositories listed below.
| Name | Summary | Repository | Webpage |
|---|---|---|---|
pyani-plus |
The pyani-plus genome comparison software |
link | webpage |
pyani-plus-docs |
Quarto documentation for pyani-plus |
link | webpage |
pyani-benchmark |
A package to generate synthetic genomes for benchmarking pyani-plus methods |
link | - |
design-documentation |
Quarto documentation outlining design choices and details for pyani-plus |
link | webpage |
A complete guide to citing pyani is included in the file CITATIONS. Please cite the following manuscript in your work, if you have found pyani useful:
Pritchard et al. (2016) "Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens" Anal. Methods 8, 12-24 DOI: 10.1039/C5AY02550H
A manuscript specifically describing pyani-plus is in preparation.