snakedispatch

Dispatches Snakemake workflows to compute backends.

Architecture

Single-tenant service: all API routes are trusted; auth is enforced at the network layer.
Compute backends (local, slurm_ssh) are abstracted behind ComputeBackend (app/backends/base.py). The backend is selected at startup from config.yaml and injected via FastAPI DI.
Job lifecycle: PENDING -> SETUP -> RUNNING -> COMPLETED/FAILED/CANCELLED. Orchestrated by execute_job in app/tasks.py; state persisted via app/store.py.
snkmt DB sync: Snakemake job-graph metadata (rule counts, file listings) is synced from the compute backend to a local SQLite file during execution and exposed via /snkmt/* endpoints. See app/snkmt.py for the query layer.

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
.github/workflows		.github/workflows
app		app
config		config
tests		tests
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
Dockerfile		Dockerfile
README.md		README.md
compose.example.yml		compose.example.yml
entrypoint.sh		entrypoint.sh
pyproject.toml		pyproject.toml
uv.lock		uv.lock